Profile
The CMMID Team
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About Me:
We are researchers from the Centre for Mathematical Modelling of Infectious Diseases (CMMID) at the London School of Hygiene & Tropical Medicine.
Sophie Meakin: Hi, I’m Sophie! I live in London with my cat, Alfie, and I like hiking, swimming outdoors, and scuba diving.
Mark Jit: Mark, lives in London, works at LSHTM.
Yang Liu: Hello I’m Yang (she/ her)! I am Chinese, a theatre buff, and an avid reader. I enjoy traveling (haven’t been much due to the pandemic), cooking, hiking, yoga, playing the piano, jigsaw puzzles, and board games with friends.
Julián Villabona-Arenas: I am Colombian, a cat dad, a traveler and a gamer. I enjoy sitting in my garden, taking a good stroll and playing board games with my friends. -
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Sophie: I moved to London in 2020 (during the pandemic!) to start my new job at LSHTM. I’m lucky to live quite near to a great outdoor heated swimming pool, where I often swim in the morning before work. I’m training to swim an open-water race this summer, probably 1-2 miles (1.5-3km). Last summer I spent two weeks walking from Plymouth to Land’s End in Cornwall, about 160 miles! I camped the whole way, and carried my tent and sleeping bag with me.
Mark: Hi, I’m Mark! I live in London and work at the London School of Hygiene & Tropical Medicine. I do have a life outside of work, and you can DM me for more info … 🙂
Yang: I was born and raised in Beijing, China and moved to a small town in the US (Williamsburg, Virginia) for university when I was 18. I then moved a few more times (to New York City and Minneapolis), got a couple more degrees, tried out several different jobs (retail, policy think tank, public relations, and even radio show host briefly!) and eventually discovered my passion for public health. I moved to London for a postdoctoral fellowship at the London School of Hygiene and Tropical Medicine upon completing my PhD in 2018 and have been here since – what I love the most about living here is the amazing theatre scene and am so glad I can now make the most of it that the shows are returning.
Julián: I live in London with my lovely partner and my playful cat. I am an immigrant from Colombia but my family still lives there. I have been living abroad for over 12 years! First, I moved to Brazil to complete my university education and then I moved to France to work as a scientist. Thanks to this I speak four languages: Spanish, Portuguese, French and English. I like traveling and I have visited around 40 countries for vacations. I also like plants and I have a bunch of them in every room of my house. In my free time I do gardening, I walk around the city (I love architecture!) and I play board games with my family and friends.
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Sophie: In my most recent work I’ve been comparing different ways to predict how many people will be admitted to hospital with COVID-19 in England. This can help hospitals to work out how many beds they will need for incoming patients. My work uses a lot of ideas about probability and statistics that I learnt as an undergraduate, and lots and lots of coding in R. Before I started my current job, I worked for the World Health Organisation as a data scientist in the Democratic Republic of Congo in Central Africa.
Mark: I’m a scientist! Like most scientists, I’m part of a big team, and each person in the team has a small but vital role, and together we can accomplish a lot. I’m part of the Centre for Mathematical Modelling of Infectious Diseases, and we use mathematics, statistics and economics to work out the best ways to stop infectious diseases from spreading. As you might guess, in the last 2 years much of our work has focused on Covid.
Yang: I consider myself a scientist that sits between science and practice. While theoretical advancement is important and exciting, I personally prefer the role of turning such advancement into useful applications. In a recent instance, public health professionals in low- and middle-income countries were running into challenges caused by limited COVID-19 vaccine supply. I adapted a mathematical model originally developed by another colleague of mine to identify the maximize the benefits of limited vaccine supply given these circumstances.
Julián: All the information to build every piece of our bodies is stored in our cells in a group of molecules that we call the genome. Viruses also have genomes that are smaller compared to ours but theirs change very fast. I look for those changes and do biological detective work using computer programs (bioinformatics) to reveal how the viruses evolve over time or how they spread from one location to another.
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My Typical Day:
Sophie: I start work at 9am, after I’ve gone for a swim. I spend most of my day on my computer, either coding, writing or in meetings. After work I’ll make dinner and relax – usually watching TV or reading a book.
Mark: Spends life on Zoom ever since the pandemic.
Yang: I split my time between Zoom meetings and writing (analysis, reports, journal articles etc…). In the evening, I often spend a few hours at the gym and then wind down by reading or playing the piano before going to bed between 10 and 11pm.
Julián: I have breakfast together with my cat. Then, I start the analysis on my computer. I have lunch and check the results in the afternoon. Finally, I relax and have dinner with my partner in the evening.
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Sophie: I often swim before work, so I usually get up around 7am, swim, and then start work at 9am. Almost all of my work is on the computer, so most of my time is split between meetings on Zoom, coding (in R), or writing about my work. I do my work with lots of other people, so I also spend time talking about my ideas and asking questions. I finish work at about 5:30pm, and have dinner at about 7pm.
Mark: I used to travel around the UK and the world a lot to talk to people in different places and understand what was happening around different infections. Nowadays, I do the same but via Zoom! So I’m glued to a computer screen for most of the day, talking to people from universities, hospitals, government agencies and charities to work out the best ways we can help.
Yang: I am an early bird! On most weekdays I get up between 630am and 7am. After enjoying a morning cup of coffee, I start working between 730am and 8am after commuting from my bedroom to living room (where my computer is located). I work with people in East Asian time zones. Because of the time differences, I sometimes have early morning meetings. For me, afternoon is the time I use to focus on doing the actual science. I may have more meetings with people in the North American central-eastern time zones in late afternoon/ early evening, but I try to get to the gym before 7pm. Time after the gym is for dinner and something relaxing, be it reading, piano-playing, jigsaw puzzles, or TV-watching.
Julián: I am not an early bird so I wake up around 9.00. I have breakfast with my cat (he loves yogurt in the morning!) and then I start coding (this means that I use the computer language to tell my computer what to do) around 10.00. After that, I have lunch and a small break to relax. In the afternoon, I check the results of my analysis and I read the results of other scientists. Finally, I have dinner with my partner around 19.00 and we play board games or watch TV before going to bed.
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Education:
Sophie: I did my GCSEs and A-levels at Rugby High School in Warwickshire. I did my undergraduate degree at the University of Bristol and my PhD at the University of Warwick.
Mark: I did my degrees at UCL and King’s College London.
Yang: I graduated from Beijing No. 101 High School, located in the beautiful Yuanmingyuan Park in northwest Beijing. I got my degrees in higher education from the College of William and Mary, the Columbia University, and the University of Minnesota (Twin Cities).
Julián: Industrial University of Santander (UIS) (Colombia)
University of São Paulo (USP) (Brasil) -
Qualifications:
Sophie: I did maths, further maths, biology and chemistry at A-level, and French at AS-level. I have a masters (MSci) in Mathematics and a PhD in Mathematics of Real-World Systems (applied maths)
Mark: I did maths, further maths, chemistry and physics at A-level, and biology AS-level many years later. I have various degrees (BSc, PhD, masters) in mathematics, mathematical biology and public health.
Yang: I did economics and international relations during my undergraduate years, with a focus on environmental policy impact assessment. My master’s degree was on environmental science, through which I researched environmental health topics. My PhD was on environmental and occupational epidemiology – I studied the impact of extreme weather events (e.g. heat waves, cold spells) on population health.
Julián: BSc in Biology, ScD in Microbiology
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Work History:
Sophie: Jan – Apr 2020: Consultant at World Health Organisation
2017 – 2019: Teaching Assistant on undergraduate courses in maths and statistics at the University of Warwick.Mark: 2011 – today: I worked at the London School of Hygiene & Tropical Medicine at the same time as being at the HPA. Part-time at first, but gradually increasing my LSHTM share until it became full-time. I’m also a visiting professor at the University of Hong Kong, working with the infectious disease team there.
2009 – 2020: Back at the HPA (which was soon renamed Public Health England).
2008 – 2009: Senior lecturer at the University of Birmingham.
2006 – 2008: Health economist at the HPA (Health Protection Agency, now part of the UK Health Security Agency).
2003 – 2006: Postdoc scientist at UCLYang: Research Fellow – London School of Hygiene and Tropical Medicine (UK)
Research Scientist – Minnesota Department of Health (USA)
Research and Teaching Assistant – University of Minnesota Twin Cities (USA)
Analyst – World Health Organization (USA)
Research Assistant – Columbia University & NASA Goddard Institute for Space Studies (USA)
Impact assessment intern – World Resources Institute (USA)Julián: Postdoctoral researcher – The Institute of Computational Biology (France)
Postdoctoral researcher – The Research Institute for Development (IRD) (France)
Postdoctoral researcher – University of Montpellier (UM) (France)
PhD candidate – University of São Paulo (Brasil) -
Current Job:
Sophie: Research Fellow in real-time modelling of infectious disease outbreaks
Mark: Professor of vaccine epidemiology
Yang: Assistant Professor
Julián: Assistant Professor
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My Interview